Refactor code structure for improved readability and maintainability

pyproject.toml

@@ -7,6 +7,12 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "pygui"
 version = "0.1.0"
+dependencies = [
+    "pyyaml>=6.0.3",
+    "scipy>=1.17.1",
+    "pandas>=2.0.0",
+    "matplotlib>=3.7.0",
+]
 
 [project.optional-dependencies]
 dev = ["pytest"]
@@ -50,10 +56,28 @@ files = [
     "src/pygui/backend/marching_squares.py",
     "src/pygui/backend/zwafer_models.py",
     "src/pygui/backend/zwafer_parser.py",
+    "src/pygui/backend/frame_stats.py",
+    "src/pygui/backend/threshold_classifier.py",
+    "src/pygui/backend/stability_detector.py",
+    "src/pygui/backend/csv_recorder.py",
+    "src/pygui/backend/frame_player.py",
+    "src/pygui/backend/stream_reader.py",
+    "src/pygui/backend/session_model.py",
+    "src/pygui/backend/session_controller.py",
+    "src/pygui/backend/wafer_layouts.py",
+    "src/pygui/backend/rbf_heatmap.py",
+    "src/pygui/backend/wafer_map_item.py",
     "src/pygui/serialcomm/__init__.py",
     "src/pygui/serialcomm/data_parser.py",
     "src/pygui/serialcomm/device_service.py",
     "src/pygui/serialcomm/serial_port.py",
+    "src/pygui/ISC/Tabs/WaferMapTab.qml",
+    "src/pygui/ISC/Tabs/components/WaferMapView.qml",
+    "src/pygui/ISC/Tabs/components/SourcePanel.qml",
+    "src/pygui/ISC/Tabs/components/ReadoutPanel.qml",
+    "src/pygui/ISC/Tabs/components/TransportBar.qml",
+    "src/pygui/ISC/Tabs/components/ReplaceSensorDialog.qml",
+    "src/pygui/ISC/Tabs/components/qmldir",
 ]
 
 [dependency-groups]