Restructure into src/ layout under pygui package

Move all application source under src/pygui/ and rewire imports,
build config, and QML module path to match.
- Relocate backend/, serialcomm/, and the ISC QML module into
  src/pygui/; convert main.py into pygui/__main__.py with a main()
  entry point (run via `python -m pygui` or the new `isc` script)
- Rewrite absolute imports: backend.* -> pygui.backend.*,
  serialcomm.* -> pygui.serialcomm.* (source + tests)
- Move app icons (isc.ico/icns) into packaging/
- Update README and ISC.qmlproject to the new paths

.gitignore

@@ -5,6 +5,9 @@ __pycache__/
 *.pyd
 *.so
 *.a
+*.egg-info/
+.pytest_cache/
+.ruff_cache/
 
 # Virtual environment
 .venv/
@@ -14,10 +17,11 @@ env/
 # IDE
 .vscode/
 .idea/
+.qtcreator/
 *.swp
 *.swo
 *~
-
+docs
 # OS
 .DS_Store
 Thumbs.db
@@ -34,4 +38,6 @@ build/
 dist/
 *.spec
 *.icns
-*.ico
+*.ico
+# Superpowers brainstorming visual companion
+.superpowers/

ISC.qmlproject

@@ -0,0 +1,16 @@
+import type QmlProjectModel 1.0
+
+QmlProject {
+    name: "ISC"
+    version: "1.0"
+    mainFile: "src/pygui/ISC/Main.qml"
+
+    dependencies {
+        module: "QtQuick"
+        minimumVersion: "6.0.0"
+    }
+
+    importPaths: [
+        "src/pygui"
+    ]
+}

README.md

@@ -16,34 +16,42 @@ python3 -m venv .venv
 source .venv/bin/activate
 python -m pip install --upgrade pip
 pip install -r requirements.txt
+pip install -e .            # install the `pygui` package (src/ layout) in editable mode
 ```
 
 ## Run
 
 ```bash
 source .venv/bin/activate
-python main.py
+python -m pygui             # or run the `isc` console script
 ```
 
-This launches the Qt window and loads the `ISC` QML module from `ISC/Main.qml`.
+This launches the Qt window and loads the `ISC` QML module from `src/pygui/ISC/Main.qml`.
 
 ## Project Structure
 
-- `main.py`: PySide6 bootstrap; creates the Qt app and loads QML module `ISC/Main`.
+The application lives under a `src/` layout as the `pygui` package:
-- `ISC/Main.qml`: top-level window definition.
+
-- `ISC/HomePage.qml`: main UI layout (left action rail, workspace panel, footer tabs).
+- `src/pygui/__main__.py`: PySide6 bootstrap; creates the Qt app and loads QML module `ISC/Main`. Entry point for `python -m pygui`.
-- `ISC/Theme.qml`: shared theme constants and dark/light mode tokens.
+- `src/pygui/backend/`: Qt-facing models and controllers (device, settings, file browser, wafer parsing).
-- `ISC/qmldir`: QML module registration.
+- `src/pygui/serialcomm/`: serial port, device service, and data-parser layer.
+- `src/pygui/ISC/`: the `ISC` QML module (UI).
+  - `Main.qml`: top-level window definition.
+  - `HomePage.qml`: main UI layout (left action rail, workspace panel, footer tabs).
+  - `Theme.qml`: shared theme constants and dark/light mode tokens.
+  - `qmldir`: QML module registration.
+- `tests/`: pytest suite.
+- `packaging/`: PyInstaller spec (`isc.spec`) and app icons.
 
 ## Window Configuration
 
-Window dimensions and constraints are defined in `ISC/Main.qml`:
+Window dimensions and constraints are defined in `src/pygui/ISC/Main.qml`:
 
 - **Default size**: 1400 × 820 pixels
 - **Minimum size**: 1100 × 700 pixels
 - **Title bar**: "ISenseCloud"
 
-To adjust the window, edit the `Window` block in `ISC/Main.qml`:
+To adjust the window, edit the `Window` block in `src/pygui/ISC/Main.qml`:
 
 ```qml
 Window {
@@ -58,8 +66,8 @@ Window {
 
 ## Customization
 
-- Toggle dark/light mode in `ISC/Theme.qml` via `isDarkMode`.
+- Toggle dark/light mode in `src/pygui/ISC/Theme.qml` via `isDarkMode`.
-- Update sidebar and footer labels in `ISC/HomePage.qml` through `sideActions` and `bottomTabs`.
+- Update sidebar and footer labels in `src/pygui/ISC/HomePage.qml` through `sideActions` and `bottomTabs`.
 
 ## Troubleshooting
 

pyproject.toml

@@ -1,3 +1,8 @@
+# ===== Build System =====
+[build-system]
+requires = ["setuptools>=61"]
+build-backend = "setuptools.build_meta"
+
 # ===== Project Metadata =====
 [project]
 name = "pygui"
@@ -6,9 +11,50 @@ version = "0.1.0"
 [project.optional-dependencies]
 dev = ["pytest"]
 
+# ===== Console Entry Point =====
+[project.scripts]
+isc = "pygui.__main__:main"
+
+# ===== Package Discovery (src layout) =====
+[tool.setuptools.packages.find]
+where = ["src"]
+
+[tool.setuptools.package-data]
+# Ship the QML module alongside the Python package.
+pygui = ["ISC/**/*.qml", "ISC/**/qmldir"]
+
 # ===== PySide Build Inputs =====
 [tool.pyside6-project]
-files = ["ISC/HomePage.qml", "ISC/Main.qml", "ISC/Tabs/DataTab.qml", "ISC/Tabs/GraphTab.qml", "ISC/Tabs/SelectFileDialog.qml", "ISC/Tabs/SettingsTab.qml", "ISC/Tabs/StatusTab.qml", "ISC/Tabs/qmldir", "ISC/Theme.qml", "ISC/qmldir", "backend/data_model.py", "backend/device_controller.py", "backend/graph_view.py", "backend/file_browser.py", "backend/local_settings.py", "backend/local_settings_model.py", "main.py", "serialcomm/__init__.py", "serialcomm/data_parser.py", "serialcomm/serial_port.py", "serialcomm/device_service.py"]
+files = [
+    "src/pygui/ISC/HomePage.qml",
+    "src/pygui/ISC/Main.qml",
+    "src/pygui/ISC/Theme.qml",
+    "src/pygui/ISC/qmldir",
+    "src/pygui/ISC/Tabs/DataTab.qml",
+    "src/pygui/ISC/Tabs/SelectFileDialog.qml",
+    "src/pygui/ISC/Tabs/SettingsTab.qml",
+    "src/pygui/ISC/Tabs/StatusTab.qml",
+    "src/pygui/ISC/Tabs/qmldir",
+    "src/pygui/__main__.py",
+    "src/pygui/backend/contour_models.py",
+    "src/pygui/backend/crypto_helper.py",
+    "src/pygui/backend/csv_file_metadata.py",
+    "src/pygui/backend/data_model.py",
+    "src/pygui/backend/data_segment.py",
+    "src/pygui/backend/device_controller.py",
+    "src/pygui/backend/file_browser.py",
+    "src/pygui/backend/frame.py",
+    "src/pygui/backend/graph_view.py",
+    "src/pygui/backend/local_settings.py",
+    "src/pygui/backend/local_settings_model.py",
+    "src/pygui/backend/marching_squares.py",
+    "src/pygui/backend/zwafer_models.py",
+    "src/pygui/backend/zwafer_parser.py",
+    "src/pygui/serialcomm/__init__.py",
+    "src/pygui/serialcomm/data_parser.py",
+    "src/pygui/serialcomm/device_service.py",
+    "src/pygui/serialcomm/serial_port.py",
+]
 
 [dependency-groups]
 dev = [

src/pygui/__main__.py

@@ -5,13 +5,14 @@ from PySide6.QtQml import QQmlApplicationEngine
 from PySide6.QtQuickControls2 import QQuickStyle
 from PySide6.QtWidgets import QApplication
 
-from backend.device_controller import DeviceController
+from pygui.backend.device_controller import DeviceController
-from backend.local_settings import LocalSettings
+from pygui.backend.local_settings import LocalSettings
-from backend.local_settings_model import LocalSettingsModel
+from pygui.backend.local_settings_model import LocalSettingsModel
-from backend.file_browser import FileBrowser
+from pygui.backend.file_browser import FileBrowser
+
 
 # ===== Application Entry Point =====
-if __name__ == "__main__":
+def main() -> int:
     # ===== UI Style Setup =====
     # Use a non-native controls style so our custom QML button backgrounds are supported.
     QQuickStyle.setStyle("Basic")
@@ -35,11 +36,17 @@ if __name__ == "__main__":
     engine.rootContext().setContextProperty("deviceController", device_controller)
 
     # ===== QML Startup =====
+    # The "ISC" QML module lives alongside this file (src/pygui/ISC), so the
+    # package directory is the import path the engine searches for qmldir.
     engine.addImportPath(Path(__file__).parent)
     engine.loadFromModule("ISC", "Main")
 
     # ===== Exit Handling =====
     if not engine.rootObjects():
-        sys.exit(-1)
+        return -1
 
-    sys.exit(app.exec())
+    return app.exec()
+
+
+if __name__ == "__main__":
+    sys.exit(main())

src/pygui/backend/device_controller.py

@@ -15,17 +15,17 @@ from typing import Any, Optional
 
 from PySide6.QtCore import QObject, Property, Qt, Signal, Slot
 
-from backend.data_model import TemperatureTableModel
+from pygui.backend.data_model import TemperatureTableModel
-from backend.graph_view import GraphView
+from pygui.backend.graph_view import GraphView
-from backend.local_settings import LocalSettings
+from pygui.backend.local_settings import LocalSettings
-from serialcomm.data_parser import (
+from pygui.serialcomm.data_parser import (
     convert_to_temperatures,
     parse_binary_data,
     remove_trailing_zeros,
     save_to_csv,
 )
-from serialcomm.device_service import DeviceService
+from pygui.serialcomm.device_service import DeviceService
-from serialcomm.serial_port import WaferInfo
+from pygui.serialcomm.serial_port import WaferInfo
 
 log = logging.getLogger(__name__)
 

src/pygui/backend/file_browser.py

@@ -8,8 +8,8 @@ from pathlib import Path
 from PySide6.QtCore import QObject, Property, QStandardPaths, Signal, Slot
 from PySide6.QtWidgets import QFileDialog, QMessageBox
 
-from backend.csv_file_metadata import CSVFileMetadata
+from pygui.backend.csv_file_metadata import CSVFileMetadata
-from backend.zwafer_parser import ZWaferParser
+from pygui.backend.zwafer_parser import ZWaferParser
 
 
 # ===== File Browser Model =====

src/pygui/backend/frame.py

@@ -0,0 +1,11 @@
+from __future__ import annotations
+from dataclasses import dataclass
+
+
+@dataclass(frozen=True)
+class Frame:
+    """One sample across all sensors ata a point in time"""
+
+    seq: int
+    t: float
+    values: list[float]

src/pygui/backend/local_settings_model.py

@@ -6,7 +6,7 @@ from typing import Any
 
 from PySide6.QtCore import QObject, Property, QDateTime, QStandardPaths, Signal, Slot
 
-from backend.local_settings import LocalSettings
+from pygui.backend.local_settings import LocalSettings
 
 
 MASTER_FAMILIES = ("A", "B", "C", "D", "E", "F", "P", "X", "Z")

src/pygui/backend/marching_squares.py

@@ -2,7 +2,7 @@ from typing import List, Tuple, Optional
 
 import numpy as np
 
-from backend.contour_models import ContourLine, ContourSegment
+from pygui.backend.contour_models import ContourLine, ContourSegment
 
 
 # ===== Contour Generation =====

src/pygui/backend/zwafer_parser.py

@@ -2,7 +2,7 @@ from pathlib import Path
 from typing import Tuple, Optional
 from datetime import datetime, timedelta
 
-from backend.zwafer_models import ZWaferData, Sensor
+from pygui.backend.zwafer_models import ZWaferData, Sensor
 
 
 # ===== Z-Wafer CSV Parser =====

src/pygui/serialcomm/__init__.py

@@ -1,6 +1,6 @@
 """Serial port communication layer for the temperature-sensing wafer."""
 
-from serialcomm.device_service import DeviceService
+from pygui.serialcomm.device_service import DeviceService
-from serialcomm.serial_port import SerialPort, WaferInfo
+from pygui.serialcomm.serial_port import SerialPort, WaferInfo
 
 __all__ = ["DeviceService", "SerialPort", "WaferInfo"]

src/pygui/serialcomm/device_service.py

@@ -11,8 +11,8 @@ from typing import Optional
 
 import serial.tools.list_ports
 
-from backend.local_settings import LocalSettings
+from pygui.backend.local_settings import LocalSettings
-from serialcomm.serial_port import SerialPort, WaferInfo
+from pygui.serialcomm.serial_port import SerialPort, WaferInfo
 
 log = logging.getLogger(__name__)